You can also follow our publications on CiteULike, euHeart group: http://www.citeulike.org/group/12512.

2010

• N. Toussaint, C. Stoeck, M. Sermesant, S. Kozerke, and P. Batchelor. Three-dimensional prolate spheroidal extrapolation for sparse DTI of the in-vivo heart. In International Society in Magnetic Resonance in Medicine, Sockholm, June 2010 (ISMRM’10) - Cardiovascular Image Postprocessing, June 2010.

• D. Giese, V. Knobloch, H. Pedersen, T. Schaeffter, and S. Kozerke. Highly accelerated cine phase-contrast flow measurements using k-t pca with spatial compartments. In International Society in Magnetic Resonance in Medicine, Sockholm, June 2010 (ISMRM’10) - Myocardial Function Human & Experimental Studies, June 2010.

• C. A. Rinaldi, P. D. Lambiase, M. Sermesant, P. Chinchapatnam, K. Rhode, S. G. Duckett, A. Shetty, R. Chabiniok, T. Mansi, F. Billet, M. Peyrat J, H. Delingette, P. Moireau, M. Sorine, D. Chapelle, N. Ayache, M. R. Ginks, and R. Razavi. Biophysical modelling to predict acute hemodynamic response to cardiac resynchronization therapy in humans. In Heart Rhythm 2010 Society’s 31st Annual Scientific Sessions, May 2010.

• S. G. Duckett, M. R. Ginks, B. R. Knowles, Y. Ma, A. Shetty, G. S. Carr-White, R. Razavi, T. Schaeffter, K. Rhode, and C. A. Rinaldi. Real time overlay of coronary vein anatomy and myocardial scar to guide left ventricular lead implantation in cardiac resynchronisation therapy. In Heart Rhythm 2010 Society’s 31st Annual Scientific Sessions, May 2010.

• M. P. Garcia, C. Toumoulin, P. Haigron, J. Velut, M. Garreau, and D. Boulmier. Coronary vein tracking from msct using a minimum cost path approach. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pages 17–20. April 2010.

• Jerome Velut, Christine Toumoulin, and Jean-Louis Coatrieux. 3D coronary structure tracking algorithm with regularization and multiple hypotheses in MRI. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pages 37–40. April 2010.

• Rosa M. Figueras i Ventura, Corne Hoogendoorn, Federico M. Sukno, and Alejandro F. Frangi. Bilinear point distribution models for heart motion analysis. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pages 476–479. April 2010.

• Pol Grasland-Mongrain, Jochen Peters, and Olivier Ecabert. Combination of shape-constrained and inflation deformable models with application to the segmentation of the left atrial appendage. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pages 428–431. April 2010.

• Andrew Miller, Justin Marsh, Adam Reeve, Alan Garny, Randall Britten, Matt Halstead, Jonathan Cooper, David Nickerson, and Poul Nielsen. An overview of the cellml api and its implementation. BMC Bioinformatics, 11(1):178+, April 2010

• Philippe Moireau and Dominique Chapelle. Reduced-order unscented kalman filtering with application to parameter identification in large-dimensional systems. ESAIM: Control, Optimisation and Calculus of Variations, March 2010.

• Federico M. Sukno, Constantine Butakoff, Bart H. Bijnens, and Alejandro F. Frangi. Sparse active shape models: influence of the interpolation kernel on segmentation accuracy and speed. volume 7623, pages 76234X+. SPIE Medical Imaging, 2010.

• Corné Hoogendoorn, Tristan Whitmarsh, Nicolas Duchateau, Federico M. Sukno, Mathieu De Craene, and Alejandro F. Frangi. A groupwise mutual information metric for cost efficient selection of a suitable reference in cardiac computational atlas construction. volume 7623, pages 76231R+. SPIE Medical Imaging, 2010.

• Daniel Romero, Rafael Sebastian, Bart H. Bijnens, Viviana Zimmerman, Patrick M. Boyle, Edward J. Vigmond, and Alejandro F. Frangi. Effects of the purkinje system and cardiac geometry on biventricular pacing: A model study. Annals of Biomedical Engineering, January 2010.

• Jeroen P. H. M. van den Wijngaard, Pepijn van Horssen, Rene ter Wee, Ruben Coronel, Jacques M. T. de Bakker, Nicolaas de Jonge, Maria Siebes, and Jos A. E. Spaan. Organization and collateralization of a subendocardial plexus in end-stage human heart failure. Am J Physiol Heart Circ Physiol, 298(1):H158-162, January 2010.

 

 2009

• P. J. Hunter and M. Viceconti. The VPH-Physiome project: Standards and tools for multiscale modeling in clinical applications. Biomedical Engineering, IEEE Reviews in, 2:40-53, December 2009.

• Shawn C. Shadden, Matteo Astorino, and Jean-Frédéric Gerbeau. Computational analysis of an aortic valve jet with lagrangian coherent structures. Chaos: An Interdisciplinary Journal of Nonlinear Science, 20(1):017512, 2010.

• D. A. Nordsletten, S. A. Niederer, M. P. Nash, P. J. Hunter, and N. P. Smith. Coupling multi-physics models to cardiac mechanics. Progress in Biophysics and Molecular Biology, November 2009.

• G. Piella, M. De Craene, B. H. Bijnens, C. Tobon-Gomez, H. Huguet, and A. F. Frangi. The use of strain distribution from MRI tagging to evaluate deformation in hypertrophic cardiomyopathies. In EUROECHO 2009, December 2009.

• S. G. Duckett, M. Ginks, B. R. Knowles, S. Sinclair, G. Carr-White, C. A. Rinaldi, R. Botnar, E. Nagel, R. Razavi, and T. Schaeffter. Whole-heart magnetic resonance imaging for visualization of venous anatomy and myocardial scar using slow infusion of gd-bopta in single exam. In SCMR 2009.

• N. Toussaint, P. G. Batchelor, S. Durrleyman, and S. Kozerke. Error assessment on myocardial fiber orientations from DTI measurements. In ESMRMB 2009.

• Alan Garny, Jonathan Cooper, and Peter J. Hunter. Toward a VPH/Physiome toolkit. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2009.

• H. Ho, D. Ladd, A. Holden, and P. Hunter. Patient-specific haemodynamic analysis for proximal protection in carotid angioplasty. In MICCAI 2009 Workshop on Computational Biomechanics for Medicine IV, September 2009.

• Catalina Tobon Gomez, Federico Sukno, Bart H. Bijnens, Marina Huguet, and Alejandro Frangi. Realistic Simulation of Local Image Appearance of Cardiac Magnetic Resonance Imaging Using a Virtual Phantom Population. In CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, pages 132-140, London United Kingdom, 2009.

• Hans Lamecker, Tommaso Mansi, Jatin Relan, Florence Billet, Maxime Sermesant, Nicholas Ayache, and Delingette, Hervé. Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations. In CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, pages 149-158, London United Kingdom, 2009.

• Jatin Relan, Maxime Sermesant, Mihaela Pop, Delingette, Hervé, Michel Sorine, Graham Wright, and Nicholas Ayache. Volumetric Prediction of Cardiac Electrophysiology using a Heart Model Personalised to Surface Data. In CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, London United Kingdom, 2009.

• Michael V. N. Truong, Abdullah Aslam, Christopher A. Rinaldi, Reza Razavi, Graeme P. Penney, and Kawal Rhode. Preliminary Investigation: 2D-3D Registration of MR and X-ray Cardiac Images Using Catheter Constraints. In CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, London United Kingdom, 2009.

• Oscar Camara, Bart H. Bijnens, Etel Silva, David Andreu, Steffen Oeltze, Daniel Romero, Mathieu De Craene, David Tamborero, Rafael Sebastian, Lluis Mont, Marta Sitges, and Alejandro Frangi. Mechanical dyssynchrony indices from an electrophysiological contact mapping system predict response to CRT. In CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, London United Kingdom, 2009.

• Harvey Ho, Gregory Sands, Holger Schmid, Kumar Mithraratne, Gordon Mallinson, and Peter Hunter. A hybrid 1D and 3D approach to hemodynamics modelling for a patient-specific cerebral vasculature and aneurysm. In Medical Image Computing and Computer-Assisted Intervention MICCAI 2009, pages 323-330. 2009.

• Nicolas Duchateau, Mathieu De Craene, Etel Silva, Marta Sitges, Bart Bijnens, and Alejandro Frangi. Septal flash assessment on CRT candidates based on statistical atlases of motion. In Guang-Zhong Yang, David Hawkes, Daniel Rueckert, Alison Noble, and Chris Taylor, editors, Medical Image Computing and Computer-Assisted Intervention MICCAI 2009, volume 5762, chapter 92, pages 759-766. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• M. V. N. Truong, A. Aslam, M. Ginks, C. A. Rinaldi, R. Rezavi, G. P. Penney, and K. S. Rhode. 2d-3d registration of cardiac images using catheter constraints. In Computers in Cardiology, 2009, 2009.

• V. Zimmerman, R. Sebastian, B. H. Bijnens, and A. F. Frangi. Modeling the purkinje conduction system with a non deterministic rule based iterative method. In Computers in Cardiology, 2009.

• D. Giese, V. Knobloch, T. Schaeffter, H. Pedersen, and S. Kozerke. Compartment-based k-t pca for highly accelerated cine phase contrast MRI. In ISMRM Workshop Serie 2009: Cardiovascular Flow, Function & Tissue Mechanics, 2009.

• H. Ho, K. Mithraratne, T. Mabotuwana, and P. Hunter. A software tool for hemodynamics modeling in large vasculatures. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, volume 25/4, chapter 25, pages 97-100. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• J. Relan, M. Sermesant, M. Pop, H. Delingette, M. Sorine, G. A. Wright, and N. Ayache. Parameter estimation of a 3D cardiac electrophysiology model including the restitution curve using optical and MR data. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, volume 25/4, chapter 456, pages 1716-1719. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• O. Dössel, M. Krüger, G. Seemann, and F. Weber. euHeart and atrial fibrillation modeling, personalization and planning of ablation. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, volume 25/4, chapter 517, page 1948. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• M. W. Krueger, F. M. Weber, G. Seemann, and O. Dössel. Semi-automatic segmentation of sinus node, bachmann's bundle and terminal crest for patient specific atrial models. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, volume 25/4, chapter 180, pages 673-676. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• O. Camara Rey. Detecting abnormal septal motion by combining spatial and electrical information from endocardial mapping data in CRT candidates. In European Society of Cardiology, 2009.

• R. Sebastian. The role of the myocardial fibre orientation in homogenizing transmural electrical activation. In European Society of Cardiology.

• H. Schmid, W. Wang, P. J. Hunter, and M. P. Nash. A finite element study of invariant-based orthotropic constitutive equations in the context of myocardial material parameter estimation. Computer Methods in Biomechanics and Biomedical Engineering, 12(6):691-699, July 2009.

• M. W. Krueger, F. M. Weber, G. Seemann, and O. Dössel. Influence of myocardial structures on electrophysiologic simulations in patient specific atrial models. In The Cardiac Physiome: Multi-scale and Multi-physics Mathematical Modelling Applied to the Heart, 2009.

• M. Cooling, P. Hunter, and E. Crampin. Modeling hypertrophic ip3 transients in the cardiac myocyte. Biophysical Journal, 93(10):3421-3433, November 2007.

• J. Relan, M. Sermesant, H. Delingette, M. Pop, G. A. Wright, N. Ayache. Quantitative comparison of two cardiac electrophysiology models using personalisation to optical and MR data, IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI '09,August 2009.

• Maxime Sermesant, Florence Billet, Radomir Chabiniok, Tommaso Mansi, Phani Chinchapatnam, Philippe Moireau, Jean-Marc Peyrat, Kawal Rhode, Matt Ginks, Pier Lambiase, Simon Arridge, Hervé Delingette, Michel Sorine, C. Rinaldi, Dominique Chapelle, Reza Razavi, and Nicholas Ayache. Personalised electromechanical model of the heart for the prediction of the acute effects of cardiac resynchronisation therapy. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 26, pages 239-248. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Gunnar Seemann, Paola Carillo, Daniel Weiss, Martin Krueger, Olaf Dössel, and Eberhard Scholz. Investigating arrhythmogenic effects of the hERG mutation n588k in virtual human atria. In Nicholas Ayache, Hervé
  Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 16, pages 144-153. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Pepijn van Horssen, Jeroen van den Wijngaard, Froukje Nolte, Imo Hoefer, Rene Haverslag, Jos Spaan, and Maria Siebes. Extraction of coronary vascular tree and myocardial perfusion data from stacks of cryomicrotome images. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 52, pages 486-494. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Helko Lehmann, Reinhard Kneser, Mirja Neizel, Jochen Peters, Olivier Ecabert, Harald Kühl, Malte Kelm, and Jürgen Weese. Integrating viability information into a cardiac model for interventional guidance. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 34, pages 312-320. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Florence Billet, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac motion recovery and boundary conditions estimation by coupling an electromechanical model and cine-MRI data. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 41, pages 376-385. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Oscar Camara, Estanislao Oubel, Gemma Piella, Simone Balocco, Mathieu De Craene, and Alejandro Frangi. Multi-sequence registration of cine, tagged and delay-enhancement MRI with shift correction and steerable pyramid-based detagging. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 36, pages 330-338. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Oscar Camara, Steffen Oeltze, Mathieu De Craene, Rafael Sebastian, Etel Silva, David Tamborero, Lluis Mont, Marta Sitges, Bart Bijnens, and Alejandro Frangi. Cardiac motion estimation from intracardiac electrical mapping data: Identifying a septal flash in heart failure. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 3, pages 21-29. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Daniel Romero, Rafael Sebastian, Bart Bijnens, Viviana Zimmerman, Patrick Boyle, Edward Vigmond, and Alejandro Frangi. The Purkinje system and cardiac geometry: Assessing their influence on the paced heart. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 8, pages 68-77. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Ignacio Larrabide, Pedro Omedas, Yves Martelli, Xavier Planes, Maarten Nieber, Juan Moya, Constantine Butakoff, Rafael Sebastian, Oscar Camara, Mathieu De Craene, Bart Bijnens, and Alejandro Frangi. Gimias: An open source framework for efficient development of research tools and clinical prototypes. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 45, pages 417-426. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Mathieu Craene, Oscar Camara, Bart H. Bijnens, and Alejandro F. Frangi. Large diffeomorphic FFD registration for motion and strain quantification from 3D-US sequences. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528:437–446, 2009.

• Steven Niederer, Kawal Rhode, Reza Razavi, and Nic Smith. The importance of model parameters and boundary conditions in whole organ models of cardiac contraction. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 38, pages 348-356. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Daniele Gianni, Steve McKeever, and Nic Smith. euheartDB: A web enabled database for geometrical models of the heart. In Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors, Functional Imaging and Modeling of the Heart, volume 5528, chapter 44, pages 407-416. Springer Berlin Heidelberg, Berlin, Heidelberg, 2009.

• Y. Shi and D. R. Hose. Zero dimensional (lumped parameter) modelling of native human cardiovascular dynamics, 2009.

• G. Richard Christie, Poul M. F. Nielsen, Shane A. Blackett, Chris P. Bradley, and Peter J. Hunter. FieldML: concepts and implementation. Physical and Engineering Sciences, 367(1895):1869-1884, May 2009.

• Steven A. Niederer and Nicolas P. Smith. The role of the Frank-Starling law in the transduction of cellular work to whole organ pump function: A computational modeling analysis. PLoS Comput Biol, 5(4):e1000371, April 2009.

• J. Lee, S. Niederer, D. Nordsletten, I. Le Grice, B. Spmail, D. Kay, and N. Smith. Coupling contraction, excitation, ventricular and coronary blood fow across scale and physics in the heart. Phil. Trans. R. Soc. A, 367(1896):2311-2331, June 2009.

• S. A. Niederer, M. Fink, D. Noble, and N. P. Smith. A meta-analysis of cardiac electrophysiology computational models. Experimental Physiology, 94:486-495, May 2009.

• Alistair A. Young and Alejandro F. Frangi. Computational cardiac atlases: from patient to population and back. Experimental Physiology, 94(5):578–596, May 2009 

• D. Caulfield, B. Knowles, K. Rhode, J. Gill, A. Rinaldi, R. Razavi, and M. Cooklin. Visualisation of acute tissue injury following radiofrequency ablation. In European Cardiac Arrhythmia Society (ECAS), 2009.

• D. Caulfield, B. Knowles, K. Rhode, M. Cooklin, A. Rinaldi, R. Razavi, and J. Gill. Visualisation of interstitial oedema following af ablation using MRI. In European Cardiac Arrhythmia Society (ECAS), 2009.

• M.W. Krueger, F.M. Weber, O. Jarrousse, D.U.J. Keller, G. Seemann and O. Dössel. Anatomical, electrophysiological and mechanical modeling of the heart. In Chaste Users' & Developers' Workshop, 2009.

• C. Tobon-Gomez, B. H. Bijnens, M. Huguet, F. Sukno, G. Moragas, A. F. Frangi, Xiaoping P. Hu, and Anne V. Clough. Systolic and diastolic assessment by 3D-ASM segmentation of gated-SPECT studies: a comparison with MRI. In Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging, volume 7262, pages 726227-8, Lake Buena Vista, FL, USA, February 2009. SPIE.

• G. Piella, M. De Craene, E. Oubel, I. Larrabide, M. Huguet, B. H. Bijnens, A. F. Frangi, Xiaoping P. Hu, and Anne V. Clough. Myocardial deformation from tagged MRI in hypertrophic cardiomyopathy using an efficient registration strategy. In Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging, volume 7262, pages 726226-10, Lake Buena Vista, FL, USA, February 2009. SPIE.

• P. Horssen, J. P. H. M. Wijngaard, M. Siebes, and J. A. E. Spaan. Improved regional myocardial perfusion measurement by means of an imaging cryomicrotome. In 4th European Conference of the International Federation for Medical and Biological Engineering, pages 771-774. 2009.

• J. P. H. M. Wijngaard, P. Horssen, R. D.Wee, M. Siebes, H. Schulten, M. J. Post, and J. A. E. Spaan. Identification of coronary collaterals in imaging cryomicrotome datasets. In 4th European Conference of the International Federation for Medical and Biological Engineering, pages 768-770. 2009.

2008

• R. Sebastian, B. Bijnens, and A. Frangi. From 3D images to cardiac models: the Virtual Physiological Human (VPH) and its potential for clinical cardiology. In European Association of Echocardiography (Euroecho), Lyon, 2008.

• B. Bijnens, R. Sebastian, D. Romero, and A. Frangi. Anatomo-functional model suitable for cardiac resynchronization therapy. In 4th European Congress for Medical and Biomedical Engineering, Antwerp, 2008.

• O. Ecabert and N. Smith. Matters of the heart. The Parliament Research Review, 7, 2008.

• B. Bijnens. Ischaemic substrates. In 7th Congress of the Croatian Cardiac Society, Opatija, 2008.

• B. Bijnens. The changing role of cardiac imaging in cardiomyopathies. In The Royal Society of Medicine - Meeting of the Cardiology Section, London, 2008.

• B. Bijnens. Principles of deformation analysis doppler myocardial imaging/ speckle tracking - cardiac function, deformation and torsion. In 2nd Work shop on Tissue Doppler and Myocardial Deformation, Barcelona, 2008.

• Jos Spaan, Christina Kolyva, Jeroen van den Wijngaard, Rene ter Wee, Pepijn van Horssen, Jan Piek, and Maria Siebes. Coronary structure and perfusion in health and disease. Philosophical Transactions of the Royal Society A, 366(1878):3137-3153, September 2008.

• E. Oubel, C. Tobon-Gomez, M. De Craene, A. Frangi, G. Avegliano, and M. Huguet. Strain analysis in myocardial infarction by using tagged MRI: correlation with delayed enhancement and perfusion. In 22th International Congress of Computer Assisted Radiology and Surgery, Barcelona, 2008.

• Olivier Ecabert and Nicolas Smith. euHeart: Integrated cardiac care using patient-specific cardiovascular modeling. SPIE Newsroom, 2008.